CDS
| Accession Number | TCMCG007C33362 |
| gbkey | CDS |
| Protein Id | XP_033148683.1 |
| Location | join(22934423..22934551,22934679..22934795,22934895..22935029,22935105..22935263,22935354..22935561,22936024..22936105,22936176..22936284,22936367..22936489,22936571..22936987) |
| Gene | LOC103869880 |
| GeneID | 103869880 |
| Organism | Brassica rapa |
Protein
| Length | 492aa |
| Molecule type | protein |
| Topology | linear |
| Data_file_division | PLN |
| dblink | BioProject:PRJNA249065 |
| db_source | XM_033292792.1 |
| Definition | probable polygalacturonase At3g15720 isoform X1 [Brassica rapa] |
EGGNOG-MAPPER Annotation
| COG_category | G |
| Description | glycoside hydrolase family 28 protein polygalacturonase (pectinase) family protein |
| KEGG_TC | - |
| KEGG_Module |
M00081
[VIEW IN KEGG] |
| KEGG_Reaction |
R01982
[VIEW IN KEGG] R02360 [VIEW IN KEGG] |
| KEGG_rclass |
RC00049
[VIEW IN KEGG] |
| BRITE |
ko00000
[VIEW IN KEGG] ko00001 [VIEW IN KEGG] ko00002 [VIEW IN KEGG] ko01000 [VIEW IN KEGG] |
| KEGG_ko |
ko:K01184
[VIEW IN KEGG] |
| EC |
3.2.1.15
[VIEW IN KEGG]
[VIEW IN INGREDIENT] |
| KEGG_Pathway |
ko00040
[VIEW IN KEGG] ko01100 [VIEW IN KEGG] map00040 [VIEW IN KEGG] map01100 [VIEW IN KEGG] |
| GOs |
GO:0005575
[VIEW IN EMBL-EBI] GO:0005618 [VIEW IN EMBL-EBI] GO:0005623 [VIEW IN EMBL-EBI] GO:0005886 [VIEW IN EMBL-EBI] GO:0009505 [VIEW IN EMBL-EBI] GO:0016020 [VIEW IN EMBL-EBI] GO:0030312 [VIEW IN EMBL-EBI] GO:0031224 [VIEW IN EMBL-EBI] GO:0031225 [VIEW IN EMBL-EBI] GO:0031226 [VIEW IN EMBL-EBI] GO:0044425 [VIEW IN EMBL-EBI] GO:0044459 [VIEW IN EMBL-EBI] GO:0044464 [VIEW IN EMBL-EBI] GO:0046658 [VIEW IN EMBL-EBI] GO:0071944 [VIEW IN EMBL-EBI] |
Sequence
| CDS: ATGTTCTTAGAAAATAGAAAACTTTCTCATTATATATATGATTTAAATGTACATATATGTACCCACTTATCCATTCCATTTCATATACGTATATTGGCTGTTACTGTCGGGAAATATCCGCTTAACATGACGAAGGCTTGGTTCTTAAACTTTTCAGTGTTCATTCTCAAGATCTTCGCATATTCGAAAGCTTTGGATGTTACTCAATATGGAGCTTTTGGAGATGGAGTTACAGACGATTCTCAGGCGTTCTTGAAAGCCTGGGAAGCTGTTTGTAGCGGGACCGGAGATGGGCAGCTTATCGTTCCGGCAGGAATGTCATTTATGTTACAGCCCTTGAAGTTTCAAGGTTCTTGCAAACCGACCCCTATTGCTGTTCAGATCTTGGGCACTCTCGTTGCATCGAGTAGAGGGGAATGGAAAGGAGACAAAAACCAATGGATTCTCTTCTCAGACATAGAAGGGCTTGTGGTTGATGGTAACGGCAAAATAAACGGCCAGGGTTCGAGCTGGTGGCAACACAAAGGTTCTAGACCAACCGGATTGAAGTTCAAGAACTGCAACAATCTTAGACTTCGTGGCTTAACTCACGTAGATAGTGCGATGGCACACATTCACATAAACGGTTGCAACGATGTAACCATCTCAAATCTCCGGATAAATGCACCAGAATCAAGTCCTAACACCGATGGCATCGATATAGCCGCTTCATCCAATGTTGTCATCCAAGACTGCGTAATCGCCACTGGTGACGATTGCATTGCTATAAACTCGGGGACGGCTAACATCAGAATCTCCGGTATAGATTGCGGACCAGGCCATGGAATAAGCATAGGAAGCTTAGGAAAAGATGAAGGGGTAGCTTCAGTGGAGGATATATGTGTCCAAAACTGTAACTTTAGAGGAACTATGAATGGAGCTAGGATCAAAACCTGGCCGGGAGGATCTGGATACGCAAGAAGGATTACTTTCAATGGAATTACTCTAGATAATGTCGAGAATCCAATCATTATCGATCAGCATTACAAACATGAAGATTCTGATAAATCCACTGATGATAAGTCCTCGGCGGTGGAAGTGAGCAAAGTTGTGTATAGTAACTTCGTGGGGACGTCCAAATCAGAGTACGGTGTTAACTTTAGGTGCAGCGAGAGAGCACCATGCACAGAGATATTTATGAAAGATGTGAAAATAAAAACGGCATCATCAGGAATGGGACAAGTAGCGCAAGGACAGTGTTTAAACGTGAGAGGCGGTGTGACAACACTTGCGGTACCAGGTTTGGAGTGTTTAGCACTTTCCACAGATTGGGGGACACTGCCGGAACAAGCTTGTATGTTGCCGCAGCAATCAGGGCAGCCAGATACACGACCGTCGCAAGATCCGTTATGGGTAATATGGGTTTATGGAAGCGGAGGAAAACATTTAGGAGTATATAGTGTCGTATTAACTTCATTAATTAATCTCTTTTGGTTTTAA |
| Protein: MFLENRKLSHYIYDLNVHICTHLSIPFHIRILAVTVGKYPLNMTKAWFLNFSVFILKIFAYSKALDVTQYGAFGDGVTDDSQAFLKAWEAVCSGTGDGQLIVPAGMSFMLQPLKFQGSCKPTPIAVQILGTLVASSRGEWKGDKNQWILFSDIEGLVVDGNGKINGQGSSWWQHKGSRPTGLKFKNCNNLRLRGLTHVDSAMAHIHINGCNDVTISNLRINAPESSPNTDGIDIAASSNVVIQDCVIATGDDCIAINSGTANIRISGIDCGPGHGISIGSLGKDEGVASVEDICVQNCNFRGTMNGARIKTWPGGSGYARRITFNGITLDNVENPIIIDQHYKHEDSDKSTDDKSSAVEVSKVVYSNFVGTSKSEYGVNFRCSERAPCTEIFMKDVKIKTASSGMGQVAQGQCLNVRGGVTTLAVPGLECLALSTDWGTLPEQACMLPQQSGQPDTRPSQDPLWVIWVYGSGGKHLGVYSVVLTSLINLFWF |